Usage examples
Index: TLLLLT Quadruplex Large Ribosomal Subunit Haloalkane Dehalogenase Carbonic Anhydrase Potassium Channel KcsA
| TLLLLT QUADRUPLEX - 2CHK | |
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| LARGE RIBOSOMAL SUBUNIT - 1JJ2 |
Ribosomal exit channel is shown.Speciality of this channel is its wide radius - to catch it, we have used larger probe radius and surface cover radius - 6 A. Figure was created from Pymol export file. |
| HALOALKANE DEHALOGENASE - 1CQW | |
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| CARBONIC ANHYDRASE - 3EYX | |
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| POTASSIUM CHANNEL KcsA - 1K4C | |
Main pore in potassium channel KcsA is shown. Physico-chemical properties correspond to hydrophobic nature of the channel in high K+ concentration, when it is in closed form with bottleneck radius of around 1 A. (see in Jmol). On the other hand, channel is more hydrophilic in state with low K+ concentration (see in Jmol), when it is occupied with Na+ ion. |
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